20 research outputs found

    JGraphT -- A Java library for graph data structures and algorithms

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    Mathematical software and graph-theoretical algorithmic packages to efficiently model, analyze and query graphs are crucial in an era where large-scale spatial, societal and economic network data are abundantly available. One such package is JGraphT, a programming library which contains very efficient and generic graph data-structures along with a large collection of state-of-the-art algorithms. The library is written in Java with stability, interoperability and performance in mind. A distinctive feature of this library is the ability to model vertices and edges as arbitrary objects, thereby permitting natural representations of many common networks including transportation, social and biological networks. Besides classic graph algorithms such as shortest-paths and spanning-tree algorithms, the library contains numerous advanced algorithms: graph and subgraph isomorphism; matching and flow problems; approximation algorithms for NP-hard problems such as independent set and TSP; and several more exotic algorithms such as Berge graph detection. Due to its versatility and generic design, JGraphT is currently used in large-scale commercial, non-commercial and academic research projects. In this work we describe in detail the design and underlying structure of the library, and discuss its most important features and algorithms. A computational study is conducted to evaluate the performance of JGraphT versus a number of similar libraries. Experiments on a large number of graphs over a variety of popular algorithms show that JGraphT is highly competitive with other established libraries such as NetworkX or the BGL.Comment: Major Revisio

    JGraphT-A Java Library for Graph Data Structures and Algorithms

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    Mathematical software and graph-theoretical algorithmic packages to efficiently model, analyze, and query graphs are crucial in an era where large-scale spatial, societal, and economic network data are abundantly available. One such package is JGraphT, a programming library that contains very efficient and generic graph data structures along with a large collection of state-of-the-art algorithms. The library is written in Java with stability, interoperability, and performance in mind. A distinctive feature of this library is its ability to model vertices and edges as arbitrary objects, thereby permitting natural representations of many common networks, including transportation, social, and biological networks. Besides classic graph algorithms such as shortest-paths and spanning-tree algorithms, the library contains numerous advanced algorithms: graph and subgraph isomorphism, matching and flow problems, approximation algorithms for NP-hard problems such as independent set and the traveling salesman problem, and several more exotic algorithms such as Berge graph detection. Due to its versatility and generic design, JGraphT is currently used in large-scale commercial products, as well as noncommercial and academic research projects. In this work, we describe in detail the design and underlying structure of the library, and discuss its most important features and algorithms. A computational study is conducted to evaluate the performance of JGraphT versus several similar libraries. Experiments on a large number of graphs over a variety of popular algorithms show that JGraphT is highly competitive with other established libraries such as NetworkX or the BGL

    Biochemistry and Physiology of Bioluminescent Bacteria

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    Israel and Judah from the coming of Assyrian domination until the fall of Samaria, and the struggle for independence in Judah ( c.

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